mmseqs2 (18-8cc5c+ds-1) unstable; urgency=medium

  * Team upload.

  [ Michael R. Crusoe ]
  * d/control: simplify architecture specification by using the
    provisions from the architecture-properties package.
  * d/salsi-ci.yml: skip i386 build, add link to salsa-ci docs.

  [ Andreas Tille ]
  * Fix build with CMake 4
    Closes: #1113291
  * d/watch: version=5
  * New upstream version
  * Standards-Version: 4.7.2 (routine-update)
  * debputy lint --auto-fix (routine-update)

 -- Andreas Tille <tille@debian.org>  Sun, 19 Oct 2025 21:28:28 +0200

mmseqs2 (15-6f452+ds-2) unstable; urgency=medium

  * Team upload.
  * amd64: clean up all build directories. Closes: #1047999
  * d/control: acknowledge patch from sangmeng <sangmeng@loongson.cn>
               to add loong64 support.

 -- Michael R. Crusoe <crusoe@debian.org>  Wed, 01 Nov 2023 21:57:39 +0100

mmseqs2 (15-6f452+ds-1) unstable; urgency=medium

  * Team upload.
  * New upstream release.
  * d/rules: remove mmseqs_wrapper.bat hack, fixed upstream.
  * d/patches: refreshed; dropped gcc-13 patch applied upstream.
  * Standards-Version: 4.6.2 (routine-update)

 -- Michael R. Crusoe <crusoe@debian.org>  Tue, 31 Oct 2023 11:10:34 +0100

mmseqs2 (14-7e284+ds-2) unstable; urgency=medium

  * Team upload.
  * Add fix-gcc-13.patch to fix gcc-13 build issue. (Closes: #1037779)

 -- Bo YU <tsu.yubo@gmail.com>  Fri, 28 Jul 2023 10:31:23 +0800

mmseqs2 (14-7e284+ds-1) unstable; urgency=medium

  * Team upload.
  * Fix watch file
  * Standards-Version: 4.6.1 (routine-update)
  * lintian-overrides (see lintian bug #1017966)

 -- Andreas Tille <tille@debian.org>  Thu, 24 Nov 2022 13:02:17 +0100

mmseqs2 (13-45111+ds-2) unstable; urgency=medium

  * Team upload.
  * Fix watchfile to detect new versions on github
  * Standards-Version: 4.6.0 (routine-update)

 -- Andreas Tille <tille@debian.org>  Tue, 12 Oct 2021 10:54:01 +0200

mmseqs2 (13-45111+ds-1) unstable; urgency=medium

  * Team upload.
  * New upstream release, many bugs fixed.
  * debian/copyright: freshen, exclude xxhash
  * No tab in license text (routine-update)
  * Refresh patches.
  * debian/upstream/metadata: add their new preprint
  * Drop 32-bit archs as per upstream.

 -- Michael R. Crusoe <crusoe@debian.org>  Wed, 10 Mar 2021 11:02:39 +0100

mmseqs2 (12-113e3+ds-3) unstable; urgency=high

  * Team upload.
  * debian/control: disable building on big-endian at the request of upstream.

 -- Michael R. Crusoe <crusoe@debian.org>  Fri, 12 Feb 2021 15:31:20 +0100

mmseqs2 (12-113e3+ds-2) unstable; urgency=medium

  * Team upload.
  * Forwarded spelling patch upstream
  * debian/rules: Disable -march=native also on !x86, courtesy of Adrian Bunk

 -- Michael R. Crusoe <crusoe@debian.org>  Sun, 15 Nov 2020 19:29:37 +0100

mmseqs2 (12-113e3+ds-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * Freshen debian/copyright
  * debian/rules: Ensure all for-loops fail if there is an error
  * Build-depend on libsimde-dev 0.6.0-2 to get i386 patches from upstream
  * debian/patches/spelling: fix typos

 -- Michael R. Crusoe <crusoe@debian.org>  Wed, 02 Sep 2020 13:17:12 +0200

mmseqs2 (11-e1a1c+ds-4) unstable; urgency=medium

  * Team upload.
  * debian/patches/simde: Fix for i386 (Closes: #961101).
  * debian/rules: simplify the multi-build
  * debhelper-compat 13 (routine-update)

 -- Michael R. Crusoe <crusoe@debian.org>  Mon, 31 Aug 2020 14:25:45 +0200

mmseqs2 (11-e1a1c+ds-3) unstable; urgency=medium

  * Team upload.

  [ Alberto Garcia ]
  * debian/patches/fix-ftbfs-gcc10.patch:
    - Fix FTBFS with GCC 10 (Closes: #957552).

  [ Michael R. Crusoe ]
  * Accept the patch from Alberto, thanks!
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 04 May 2020 17:30:26 +0200

mmseqs2 (11-e1a1c+ds-2) unstable; urgency=medium

  * Install binaries only in the mmseqs2 binary package, not also the
    mmseqs2-examples binary package
  * Report the Debian package version instead of "GITDIR-NOTFOUND"
  * Small tweak to simde patch
  * Use a newer libsimde-dev that fixes a bug found by this package

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Fri, 24 Apr 2020 22:21:06 +0200

mmseqs2 (11-e1a1c+ds-1) unstable; urgency=medium

  * Team upload.
  * Enable building on non-X86 and with less than SSE4.1 using
    libsimde-dev
  * Mark mmseqs2-examples as Multi-Arch: foreign
  * Clean up debian/copyright
  * debian/upstream/metadata: add GitHub related fields

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Thu, 23 Apr 2020 22:39:06 +0200

mmseqs2 (10-6d92c+ds-2) unstable; urgency=medium

  * Team upload.
  * Do not misuse d/changelog as another README.source -> thus moved
    TODO item from d/changelog to README.source
  * Standards-Version: 4.5.0 (routine-update)
  * Remove trailing whitespace in debian/changelog (routine-update)
  * Remove trailing whitespace in debian/copyright (routine-update)
  * Do not try to call tests that are removed upstream
    Closes: #951165

 -- Andreas Tille <tille@debian.org>  Tue, 11 Feb 2020 22:57:58 +0100

mmseqs2 (10-6d92c+ds-1) unstable; urgency=medium

  * Team upload.
  * New upstream version
  * debhelper-compat 12 (routine-update)
  * Standards-Version: 4.4.1 (routine-update)

 -- Steffen Moeller <moeller@debian.org>  Sun, 19 Jan 2020 14:16:12 +0100

mmseqs2 (9-d36de+ds-4) unstable; urgency=medium

  * Team upload.

  [ Shayan Doust ]
  * Fix some pathing for different archs
  * Exclude some archs

 -- Andrius Merkys <merkys@debian.org>  Tue, 22 Oct 2019 01:02:46 -0400

mmseqs2 (9-d36de+ds-3) unstable; urgency=medium

  * Team upload.

  [ Steffen Moeller ]
  * d/u/metadata: yamllint

  [ Andreas Tille ]
  * Fix spelling

 -- Andrius Merkys <merkys@debian.org>  Fri, 18 Oct 2019 00:44:22 -0400

mmseqs2 (9-d36de+ds-2) unstable; urgency=medium

  * Fixed changelog
  * Patch to fix the matrix serialization test
  * Forgot to deallocate within serialization patch
  * Fix test_bestalphabet binary. Now works. This is used within autopkgtest
  * Patch to fix test_alignmentperformance I have excluded this as it takes a
    *very* long time to perform and probably isn't worth it. Probably should be
    used alongside a profiler
  * Patch test_dbreader and include this in the unit test
  * Patch dbreaderserialization test and include in unit test
  * Patch to fix test_dbreaderzstd and include it in the unit test
  * Patch to fix test_indextable
  * This package is only 64 bit, set it as that
  * Append to copyright more entries that were missed out
  * Detect and write more copyright entries using decopy
  * Add more entries to the copyright file
  * Delete some unnecessary lib files and outputs These are used during build
    and serve no purpose to the end users
  * libbz2-dev as a new dependency as mmseqs2 accepts *.bz inputs
  * Copyright edit and changelog append
  * Forgot to set environmental variable

 -- Shayan Doust <hello@shayandoust.me>  Thu, 25 Jul 2019 03:38:36 +0100

mmseqs2 (9-d36de+ds-1) unstable; urgency=medium

  * Initial release (Closes: #932369)

 -- Shayan Doust <hello@shayandoust.me>  Mon, 15 Jul 2019 13:45:03 +0100
